HsaEX6063929 @ hg38
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135784535-135785330:+
Coord C1 exon
chr9:135784535-135784618
Coord A exon
chr9:135784761-135784889
Coord C2 exon
chr9:135785310-135785330
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCAGGGTTCCCACCCTGCAGATG
3' ss Score
7.58
5' ss Seq
GAGGTTCTG
5' ss Score
-0.32
Exon sequences
Seq C1 exon
TCCTTCGTGAAGGACTACATGATCACCATCACCCGGCTGCTGCTGGGCCTGGACACCACGCCGGGCTCGGGGTACCTCTGTGCC
Seq A exon
ATGAAAATCACCGAGGGCGACCTGTGGATCCGCACGTACGGCCGCCTCTTCCAGAAGCTCTGCTCCTCCAGCGCCGAGATCCCCATTGGCATCTACCGGACAGAGAGCCACGTCTTCTCCACCTCGGAG
Seq C2 exon
CCCCACGACCTCAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147-'53-73,'53-72,55-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGACTACATGATCACCA
R:
TGGGCTCTGAGGTCGTGG
Band lengths:
99-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains