GgaEX7009841 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8217146-8217907:-
Coord C1 exon
chr17:8217824-8217907
Coord A exon
chr17:8217392-8217520
Coord C2 exon
chr17:8217146-8217166
Length
129 bp
Sequences
Splice sites
3' ss Seq
CAGTTGCTGTTCATCCCCAGATG
3' ss Score
7.97
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
Exon sequences
Seq C1 exon
TCATTTGTGAAGGACTACATGATCACCATCACCCGGCTGCTGCTGGGCCTCGACACCACGCCGGGCTCTGGCTACCTCTGTGCG
Seq A exon
ATGAAGATCACGGAGGACGACCTGTGGATCCGGACCTACGGGCGCCTCTTCCAGAAGCTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATTTACCGGACGGAGTCGCACATGTTCGCCACCTCCGAG
Seq C2 exon
CCCCATGACATCAGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'30-35,'30-34,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGACTACATGATCACCA
R:
CTGTGCTCTGATGTCATGGGG
Band lengths:
100-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]