BtaEX6047082 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103431108-103432289:+
Coord C1 exon
chr11:103431108-103431191
Coord A exon
chr11:103431439-103431564
Coord C2 exon
chr11:103432269-103432289
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCCCAGGCTCTGCGTTGCAGATG
3' ss Score
5.94
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
TCCTTCGTGAAGGACTACATGATCCCCATCACCAGGCTGTTGCTGGGCTTGGACACCACGCCGGGCTCCGGCTACCTCTGTGCG
Seq A exon
ATGAAGATCTCGGAGGACGACCTGTGGATCCGCACCTATGGCCGCCTCTTCCAGAAGCTGTGCTCCTCCAGCGCCGAGATCCCTATCGGCATCTACAGGACCCAGTGCCACGTCTTCTCCACCGAG
Seq C2 exon
CCCCCCGACCTCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'39-38,'39-36,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]