DreEX6025922 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12243996-12245005:-
Coord C1 exon
chr2:12244922-12245005
Coord A exon
chr2:12244375-12244503
Coord C2 exon
chr2:12243996-12244290
Length
129 bp
Sequences
Splice sites
3' ss Seq
AATCTGAAATTACGTTTCAGATG
3' ss Score
5.91
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
TCTTTTGTTAAAGATTATATGATAACAATCACCAGGCTCCTGCTGGGGTTGGAAACTACACCACAGTCTGGTTTCCTGTGTGCC
Seq A exon
ATGAGCATCACCGAGGAGGACCTATGCATTGAGACATATGGCAGGCTGTACCAAAGGCTTTCCTCCACTGTAGGAGATATTCCCATCGGCATCTACAGGACCAAGTCTCAAACAGTTGAATCCCCTGAG
Seq C2 exon
ACTCCACAATTCCAAATGTCAGACAAGGCATCTGTGTTTGATGAGGGCGGAGACCTAGATGAGCAACATCAGAATCTTCAATGCGAAATACCAGACAGTCAATTGCAGACACAGTCTCTGCGTCGGAGAAGCATGCAGTGGGCTTCCAGTCTCCTTGGGCCATGGCACACTGAGCGTGAGGCAGACAGATTGAGTCAGCATCGGGGTGTCCTGCTTTCATGCTCTGAGAGACTGGAGGTCACAGAGCTGGTCAAGAAACGCATGAAAAACCTGGGCCTATCCACTCTGGGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.172
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGGGGTTGGAAACTA
R:
CACCCCGATGCTGACTCAATC
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]