BtaEX6068132 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30789882-30804802:-
Coord C1 exon
chr16:30804560-30804802
Coord A exon
chr16:30804190-30804300
Coord C2 exon
chr16:30789882-30790129
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTTCCTTTAAAAGCTG
3' ss Score
8.21
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAACTAGTCCAGGCTAGTGAGCGATTAAAAAACCAATCCAAAGAGCTGAAAGACGCACACTGTCAGAGGAAACTGGCCATGCAGGAATTCATGGAGATCAATGAGCGGCTAACAGAATTGCACACCCAAAAACAGAAACTTGCTCGCCATGTCCGAGATAAGGAAGAAGAGGTGGACCTGGTGATGCAAAAAGTTGAAAGCTTAAGGCAAGAACTGCGCAGAACAGAAAGAGCCAAAAAAGAG
Seq A exon
CTGGAAGTTCGTACAGAAGCTGTGGCTGCTGAAGCATCTAAAGACAGGAAATTGCGTGAACAGAGTGAGCACTATTCTAAGCAACTGGAGAATGAACTAGAGGGACTGAAG
Seq C2 exon
CAAAAACAAATTAGTTACTCACCAGGCGTATGCAGCATAGAACATCAACAAGAAATAACCAAACTAAAGACTGATTTGGAAAAGAAAAGTATCTTTTATGAAGAAGAATTGTCCAAGAGAGAAGGAATACATGCAAATGAAATTAAAAATCTGAAGAAAGAACTACATGATTCAGAAGGCCAACAACTTGCTCTCAACAAAGAAATTATGATTTTGAAAGACAAATTGGAAAAAAACAGGAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'20-28,'20-26,21-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.543 A=0.811 C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGAAAGACGCACACTG
R:
TTCTATGCTGCATACGCCTGG
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]