DreEX0020178 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8270173-8273956:+
Coord C1 exon
chr17:8270173-8270226
Coord A exon
chr17:8270647-8270757
Coord C2 exon
chr17:8273875-8273956
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTAAACTGTGTGTGTGTAGATG
3' ss Score
7.14
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CGTCTGCAGGAGTCCTCAGACAAGCAGAAAGTTCAGGGGAAGGAGCTGAAGGAG
Seq A exon
ATGGAGGTCCAGGCTGAAGAGTGGTCTGCTGAGGCTCAGAAAGAGAAGAAGTTGAGGGAGCGCAGCGAGCAGTTCAGCAGACAGCTGGAAGAAGAGCTGGACAGCATCAAG
Seq C2 exon
TCATAGCGAACGAGACGAGCTTGAGTTTGAGCGAGTGCTGCTGTCTGAAGAAAACAAGAAACTGTCCAGTGAACTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283_MULTIEX1-1/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.753 A=0.919 C2=0.214
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(37.6=86.4),PF0157614=Myosin_tail_1=PU(16.2=51.9)
A:
PF0157614=Myosin_tail_1=FE(13.9=100)
C2:
PF0157614=Myosin_tail_1=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCAGGAGTCCTCAGACA
R:
GTCGAGTTCACTGGACAGTTTCT
Band lengths:
132-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]