HsaEX6037122 @ hg38
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr1:227100992-227119937:-
Coord C1 exon
chr1:227119804-227119937
Coord A exon
chr1:227112312-227112422
Coord C2 exon
chr1:227100992-227101239
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATTCTGTTTTAAAGCTG
3' ss Score
8.78
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
AATCAAGTCATTTGGAACAGCAACTTGAAGAAGCTAATGCTGTGAGGCAAGAACTAGATGATGCTTTTAGACAAATCAAGGCTTATGAAAAACAAATCAAAACGTTACAACAAGAAAGAGAAGATCTAAATAAG
Seq A exon
CTGGAAGTTCATACAGAAGCTCTAGCTGCTGAAGCATCTAAAGACAGGAAGCTACGTGAACAGAGTGAGCACTATTCTAAGCAACTGGAAAATGAATTGGAGGGACTGAAG
Seq C2 exon
CAAAAACAAATTAGTTACTCACCAGGAGTATGCAGCATAGAACATCAGCAAGAGATAACCAAACTAAAGACTGATTTGGAAAAGAAAAGTATCTTTTATGAAGAAGAATTATCTAAAAGAGAAGGAATACATGCAAATGAAATAAAAAATCTTAAGAAAGAACTGCATGATTCAGAAGGTCAGCAACTTGCTCTCAACAAAGAAATTATGATTTTAAAAGACAAATTGGAAAAAACCAGAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776_MULTIEX2-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=0.841 C2=0.194
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.4=100)
A:
PF0157614=Myosin_tail_1=FE(11.0=100)
C2:
PF0157614=Myosin_tail_1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTAGACAAATCAAGGCTT
R:
TGCTGACCTTCTGAATCATGCA
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains