GgaEX1014018 @ galGal4
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11731446-11738354:+
Coord C1 exon
chr3:11731446-11731579
Coord A exon
chr3:11733638-11733748
Coord C2 exon
chr3:11738107-11738354
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAATGCATGTATTTTTGTAGCTG
3' ss Score
4.82
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATTCTGGACATCTAGAACAGCAACTTGAAGAGGCCAGCACTGCAAGGCGGGAGTTGGACGATGCTTCCAGACAAATAAAGGCTTTTGAGAAACAGGTTAGAACACTGAAGCAAGAGAGGGAAGATCTTAATAAG
Seq A exon
CTGGAAGTCCAAGCTGAAGCTGCGGCTGCTGAGGCATCCAAAGACAGGAAATTGCGAGAGCGGAGTGAGCAGTACTCTAAGCAGCTGGAAAGTGAAGTAGAGGGGCTAAAG
Seq C2 exon
CAAAAACAGATTGGTCGCTCACCTGGGGTAAGCAGTATAGAACACCAGCAAGAGATCACTAAATTAAAGGCAGACCTGGAAAAGAAAAGTGTTTTCTATGAAGAGGAACTATCTAAACGTGAAATAATGCATGCTAATGAAATAAAAAGTCTGAAGAAGGAACTACGGGATGCAGAGAGCCAGCAGCTTGCACTTAAGAAGGAGATCATGATTTTGAAAGACAAGTTAGAGAAAACCAGAAGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=0.973 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGACGATGCTTCCAGACA
R:
TCTGCATCCCGTAGTTCCTTCT
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]