GgaEX1014018 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13282687-13287891:+
Coord C1 exon
chr3:13282687-13282929
Coord A exon
chr3:13283175-13283285
Coord C2 exon
chr3:13287644-13287891
Length
111 bp
Sequences
Splice sites
3' ss Seq
AAATGCATGTATTTTTGTAGCTG
3' ss Score
4.82
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAACTGGCAGAGTCTAGTGACAGATTAAAATCTCAAGCCAAAGAGCTGAAAGATGCACACAGCCAGCGGAAATTGGCAATGCAGGAGTTCTCAGAGATGAACGAGCGGCTGACAGACTTGCACTCTCAAAAACAAAAGCTTGCCCGCCAGCTCCGAGATAAGGAAGAAGAAATGGAAGTGGTGATGCAAAAAGTAGAAAGTTTAAGGCAAGAGTTACGCAGAACAGAGAGACTTAAAAAAGAA
Seq A exon
CTGGAAGTCCAAGCTGAAGCTGCGGCTGCTGAGGCATCCAAAGACAGGAAATTGCGAGAGCGGAGTGAGCAGTACTCTAAGCAGCTGGAAAGTGAAGTAGAGGGGCTAAAG
Seq C2 exon
CAAAAACAGATTGGTCGCTCACCTGGGGTAAGCAGTATAGAACACCAGCAAGAGATCACTAAATTAAAGGCAGACCTGGAAAAGAAAAGTGTTTTCTATGAAGAGGAACTATCTAAACGTGAAATAATGCATGCTAATGAAATAAAAAGTCTGAAGAAGGAACTACGGGATGCAGAGAGCCAGCAGCTTGCACTTAAGAAGGAGATCATGATTTTGAAAGACAAGTTAGAGAAAACCAGAAGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'15-20,'15-19,16-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.973 C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAAGAGTTACGCAGAACA
R:
TCCTTCTTAAGTGCAAGCTGCT
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]