RnoEX0018987 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98365048-98386589:+
Coord C1 exon
chr13:98365048-98365181
Coord A exon
chr13:98374930-98375040
Coord C2 exon
chr13:98386342-98386589
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTTCTGTGTTAAAGCTG
3' ss Score
6.47
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AAGTGAATCATTTGGAACAACAACTTGAAGAAGCTAATTCTGTGAGACGAGAACTAGATGATGCTTTTAGGCAAATCAAAGCTTTTGAAAAACAAATCAAAACTTTGCAGCAGGAAAGAGAAGAGCTAAATAAG
Seq A exon
CTGGAGGTTCACACTGAAGCTCTAATTGCTGAAGCCTCAAAGGACCGGAAGCTCCGAGAGCAGAGCGAACATTATTCTAAACAGCTGGAAAATGAATTGGAGGGACTGAAG
Seq C2 exon
CAAAAACAAATTAGTTACTCACCAGGAATATGCAGCATAGAACACCAGCAAGAGATAACTAAACTGAAAACTGACTTGGAAAAGAAAAGTATCTTTTATGAAGAAGAAATCTCTAAAAGAGAAGGAATTCATGCAAGTGAGATTAAAAATCTGAAGAAGGAGCTGCATGACTCAGAAGGCCAGCAACTTGCTCTCAACAAAGAAATTATGGTTTTAAAAGACAAATTGGAAAAAACCAGAAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.676 C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTAGGCAAATCAAAGCT
R:
CTGGCCTTCTGAGTCATGCAG
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]