MmuEX6029646 @ mm10
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180093944-180101272:+
Coord C1 exon
chr1:180093944-180094186
Coord A exon
chr1:180094381-180094491
Coord C2 exon
chr1:180101025-180101272
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTTTTATGTTAAAGCTG
3' ss Score
6.75
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAACTAGTCCAGGCTAGTGAGCGATTAAAAAACCAATCCAAAGAGCTGAAAGATGCACACTGTCAGAGGAAACTGGCCATGCAGGAATTCATGGAGATCAATGAGCGACTAACAGAATTGCACACCCAAAAGCAGAAACTTGCTCGCCATGTCCGAGATAAGGAAGAAGAGGTGGACCTGGTGATGCAAAAAGCTGAGAGCTTAAGGCAGGAGCTGCGCAGAGCAGAAAGAGCCAAGAAAGAG
Seq A exon
CTGGAAGTTCACACCGAAGCTCTAATTGCTGAAGCATCAAAGGACAAGAAGCTCCGAGAGCAGAGCGAACATTATTCTAAGCAACTGGAAAACGAGTTGGAGGGCCTGAAG
Seq C2 exon
CAAAAACAAATTAGTTACTCACCAGGAATATGCAGCATAGAACATCAGCAAGAGATAACTAAACTGAAAACTGACTTGGAAAAGAAAAGTATCTTTTATGAAGAAGAAATTTCTAAAAGAGAAGGAATTCACGCAAGTGAGATTAAAAACCTGAAGAAGGAGCTGCATGACTCAGAAGGCCAGCAGCTTGCTCTCAACAAAGAGATTCTGGTTTTAAAAGACAAATTGGAAAAAACCAGGAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'38-39,'38-36,39-39
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=0.660 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACCTGGTGATGCAAAA
R:
CTGGCCTTCTGAGTCATGCAG
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types