BtaEX6069898 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58041821-58049207:-
Coord C1 exon
chr16:58049061-58049207
Coord A exon
chr16:58045893-58046012
Coord C2 exon
chr16:58041821-58041964
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCCATGTTGTTTCAGCCA
3' ss Score
8.35
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGGACGACTGGACAGCTCAGTGGTGCCCAACACGGTGACAGAATTCACCATCACCAAGCTGTACCCAGCTACGGAATATGAAATCAGCCTCAACAGTGTGCGGGGCAGGGAGGAGAGTGAGCGGATCTGCACTCTTGTGCACACAG
Seq A exon
CCATGGACAATCCTGCAGACCTGACTGCTACCAACATCACCCCAACCGAAGCCCTGCTGCAGTGGAAGGCGCCCATGAGCGAAGTAGAGAACTATGTCATTGTTCTCACCCACTTTGCAG
Seq C2 exon
TTGCTGGAGAGACCATCCTGGTTGATGGAGACAGTGAAGAATTCCAGCTTGTTGACCTGCTTCCTAGGACCCACTACACGGTCACCATGTATGCCACCAGCGGGCCTCTCACCAGTGGTACCGTCAGTACCAACTTCTCTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
PF0004116=fn3=PU(48.1=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAACACGGTGACAGAATT
R:
TGACGGTACCACTGGTGAGAG
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]