HsaEX6035037 @ hg19
Exon Skipping
Gene
ENSG00000116147 | TNR
Description
tenascin R (restrictin, janusin) [Source:HGNC Symbol;Acc:11953]
Coordinates
chr1:175325455-175331945:-
Coord C1 exon
chr1:175331799-175331945
Coord A exon
chr1:175328748-175328867
Coord C2 exon
chr1:175325455-175325598
Length
120 bp
Sequences
Splice sites
3' ss Seq
GATAATCTATTCTGTTTCAGCCA
3' ss Score
7.41
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGGACGACTAGACAGCTCAGTGGTGCCCAACACTGTGACAGAATTCACCATCACCAGACTGAACCCAGCTACCGAATACGAAATCAGCCTCAACAGCGTGCGGGGCAGGGAGGAAAGCGAGCGCATCTGTACTCTTGTGCACACAG
Seq A exon
CCATGGACAACCCTGTGGATCTGATTGCTACCAATATCACTCCAACAGAAGCCCTGCTGCAGTGGAAGGCACCAGTGGGTGAGGTGGAGAACTACGTCATTGTTCTTACACACTTTGCAG
Seq C2 exon
TCGCTGGAGAGACCATCCTTGTTGACGGAGTCAGTGAGGAATTTCGGCTTGTTGACCTGCTTCCTAGCACCCACTATACTGCCACCATGTATGCCACCAATGGACCTCTCACCAGTGGCACCATCAGCACCAACTTTTCTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116147-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
PF0004116=fn3=PU(48.1=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGACTAGACAGCTCAGT
R:
ATTGGTGGCATACATGGTGGC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)