GgaEX1059701 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7027043-7028372:+
Coord C1 exon
chr8:7027043-7027186
Coord A exon
chr8:7027836-7027955
Coord C2 exon
chr8:7028229-7028372
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAAATCTGTCCTCTGTGCAGCCA
3' ss Score
7.38
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGAGGACAGACAGCACGGCCATTGGCAATGATGCCACCGAGTACATCATGCGCCTTCTGCAGCCTGCCACCAAGTATGAGATCGGAGTGAAGAGCGTGCGGGGCCGGGAGGAGAGTGAGGTGGCCTCCATCACCACATACACAG
Seq A exon
CCATGGATGCCCCGCTGGGTGTCACTGCCACCAACATCACCCCCACTGAGGCACTGCTGCAGTGGAACCCCCCGCTGATGGATGTGGAGAGCTACGTCCTCGTCCTCACCCGCCACACAG
Seq C2 exon
TTGCAGGAGAAACAATTCTGGTGGATGGAATCAACCAGGAGTACCAGCTGACCAACCTTCAGCCCAGCACCACCTACACGGTCGCCATGTATGCCACCAACGGGCCCCTCACCAGCCAGACTATCAGCACCAACTTCACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.6=81.6)
A:
PF0004116=fn3=PU(49.4=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCATGCGCCTTCTGCAG
R:
GGGTTGTGAAGTTGGTGCTGA
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]