DreEX6027892 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35448433-35455087:+
Coord C1 exon
chr2:35448433-35448576
Coord A exon
chr2:35452419-35452538
Coord C2 exon
chr2:35454944-35455087
Length
120 bp
Sequences
Splice sites
3' ss Seq
TAATCCTCTGTTCCTCACAGCTA
3' ss Score
7.4
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAAGGATGGACAGTGTGGTGATTGACAACGACATTAATAACTATACCCTAACCAGCCTCCATCCAGCAACAGAGTATGAAATCAAGCTGAACGCAGTGAGAGGAAGCCAAGAGAGCAAGGTCATCACCACTACCGTATTCACAG
Seq A exon
CTATGGACATGCCAGCGGAGCTCACTGCACTGAACGTTACACCCCAAGGGGCTCTGCTGCGCTGGAACCCCCCAGCTTCCAGTGTTGATAACTACGTGCTCACTGTCACCCGGAACCAAG
Seq C2 exon
TTACAGCAGACACCTTCTTAGTGGAGGGTAACAAGCAGGAGTATCAGCTGAGTCAGCTCATCCCCAGCACCACCTACTCAGTGGCCCTTTATGCCACCAAAGGTCCTCTCACCAGCGGCACGGTCATCTCCAACTTTGTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'16-21,'16-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF140541=DUF4249=PD(19.1=93.5),PF0004116=fn3=FE(44.1=100)
A:
PF0004116=fn3=PU(48.7=92.7)
C2:
PF0004116=fn3=PD(50.0=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATGGACAGTGTGGTGA
R:
ACCTTTGGTGGCATAAAGGGC
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]