MmuEX6028593 @ mm10
Exon Skipping
Gene
ENSMUSG00000015829 | Tnr
Description
tenascin R [Source:MGI Symbol;Acc:MGI:99516]
Coordinates
chr1:159889284-159895104:+
Coord C1 exon
chr1:159889284-159889430
Coord A exon
chr1:159892009-159892128
Coord C2 exon
chr1:159894961-159895104
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTATTCTTTTCCAGCCA
3' ss Score
10.27
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGGGACGGCTAGACAGCTCCGTAGTGCCCAACACCGTGACAGAGTTCGCCATCACCAGGCTGTATCCAGCTACTGAATATGAAATAAGCCTCAACAGTGTACGGGGCAGGGAGGAGAGTGAACGCATCTGCACCCTGGTGCACACAG
Seq A exon
CCATGGATAGCCCCATGGATTTGATCGCTACCAACATCACACCTACAGAAGCCTTGCTCCAGTGGAAAGCACCCATGGGTGAAGTGGAAAATTATGTCATCGTCCTCACACACTTTGCAA
Seq C2 exon
TTGCTGGAGAGACCATCCTGGTTGACGGGGTCAGCGAAGAATTCCAGCTTGTAGACTTGCTTCCTAGCACCCACTACACTGTCACTATGTATGCCACCAGTGGGCCTCTCATGAGTGGCACCATTGCCACCAACTTCTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015829-'20-32,'20-24,31-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
PF0004116=fn3=PU(48.7=92.7)
C2:
PF0004116=fn3=PD(50.0=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGTTCGCCATCACCAG
R:
GGAGAAGTTGGTGGCAATGGT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types