MmuEX6028593 @ mm9
Exon Skipping
Gene
ENSMUSG00000015829 | Tnr
Description
tenascin R [Source:MGI Symbol;Acc:MGI:99516]
Coordinates
chr1:161819415-161825235:+
Coord C1 exon
chr1:161819415-161819561
Coord A exon
chr1:161822140-161822259
Coord C2 exon
chr1:161825092-161825235
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTATTCTTTTCCAGCCA
3' ss Score
10.27
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGGGACGGCTAGACAGCTCCGTAGTGCCCAACACCGTGACAGAGTTCGCCATCACCAGGCTGTATCCAGCTACTGAATATGAAATAAGCCTCAACAGTGTACGGGGCAGGGAGGAGAGTGAACGCATCTGCACCCTGGTGCACACAG
Seq A exon
CCATGGATAGCCCCATGGATTTGATCGCTACCAACATCACACCTACAGAAGCCTTGCTCCAGTGGAAAGCACCCATGGGTGAAGTGGAAAATTATGTCATCGTCCTCACACACTTTGCAA
Seq C2 exon
TTGCTGGAGAGACCATCCTGGTTGACGGGGTCAGCGAAGAATTCCAGCTTGTAGACTTGCTTCCTAGCACCCACTACACTGTCACTATGTATGCCACCAGTGGGCCTCTCATGAGTGGCACCATTGCCACCAACTTCTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015829-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
PF0004116=fn3=PU(48.7=92.7)
C2:
PF0004116=fn3=PD(50.0=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGAGTTCGCCATCACCAG
R:
GGAGAAGTTGGTGGCAATGGT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: