RnoEX0092530 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77641803-77647300:+
Coord C1 exon
chr13:77641803-77641949
Coord A exon
chr13:77644514-77644633
Coord C2 exon
chr13:77647157-77647300
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTCTCCTGTTCTTTTCCAGCCA
3' ss Score
9.95
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TGGGACGGCTGGACAGCTCTGTCGTGCCCAACACTGTGACAGAGTTCACAATCACCAGGCTCTATCCAGCTACTGAATATGAAATAAGCCTCAACAGTGTACGCGGCAGGGAGGAGAGTGAACGCATCTGCACCCTGGTGCACACAG
Seq A exon
CCATGGATAGCCCCATGGATCTAATTGCTACCAACATCACGCCAACAGAAGCCCTGCTCCAGTGGAAGGCACCCATGGGTGAAGTGGAAAATTATGTCATTGTCCTCACCCACTTTGCCA
Seq C2 exon
TGGCTGGAGAGACCATCCTGGTTGATGGGGTCAGTGAAGAATTCCAGCTTGTAGACCTGCTTCCTAGGACCCACTACACTGTCACCATGTATGCTACCAGTGGACCTCTCGTGAGTGGCACCATCGCCACCAACTTCTCCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468-'23-29,'23-28,24-29
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
PF0004116=fn3=PU(48.7=92.7)
C2:
PF0004116=fn3=PD(50.0=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAACACTGTGACAGAG
R:
CCACTCACGAGAGGTCCACTG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]