HsaEX6035037 @ hg38
Exon Skipping
Gene
ENSG00000116147 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr1:175356319-175362809:-
Coord C1 exon
chr1:175362663-175362809
Coord A exon
chr1:175359612-175359731
Coord C2 exon
chr1:175356319-175356462
Length
120 bp
Sequences
Splice sites
3' ss Seq
GATAATCTATTCTGTTTCAGCCA
3' ss Score
7.41
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGGACGACTAGACAGCTCAGTGGTGCCCAACACTGTGACAGAATTCACCATCACCAGACTGAACCCAGCTACCGAATACGAAATCAGCCTCAACAGCGTGCGGGGCAGGGAGGAAAGCGAGCGCATCTGTACTCTTGTGCACACAG
Seq A exon
CCATGGACAACCCTGTGGATCTGATTGCTACCAATATCACTCCAACAGAAGCCCTGCTGCAGTGGAAGGCACCAGTGGGTGAGGTGGAGAACTACGTCATTGTTCTTACACACTTTGCAG
Seq C2 exon
TCGCTGGAGAGACCATCCTTGTTGACGGAGTCAGTGAGGAATTTCGGCTTGTTGACCTGCTTCCTAGCACCCACTATACTGCCACCATGTATGCCACCAATGGACCTCTCACCAGTGGCACCATCAGCACCAACTTTTCTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116147-'30-28,'30-27,32-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(51.2=82.0)
A:
PF0004116=fn3=PU(48.1=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGACTAGACAGCTCAGT
R:
ATTGGTGGCATACATGGTGGC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains