BtaEX6071131 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006745 | FGG
Description
Bos taurus fibrinogen gamma chain (FGG), mRNA. [Source:RefSeq mRNA;Acc:NM_173911]
Coordinates
chr17:2825337-2826998:+
Coord C1 exon
chr17:2825337-2825467
Coord A exon
chr17:2825764-2825897
Coord C2 exon
chr17:2826814-2826998
Length
134 bp
Sequences
Splice sites
3' ss Seq
AAAAATTTCTTCTTTTTCAGATT
3' ss Score
10.25
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATTTTTGCAAGAAATATATAACTCAAATAGTCAAAAAATCGTTAACCTAAGAGATAAAGTGGTCCAGCTTGAAGCAAACTGTCAAGAGCCTTGTCAAGATACAGTGAAAATACATGATGTAACTGGGAGAG
Seq A exon
ATTGCCAAGATGTTGCCAATAAGGGGGCCAAAGAGAGTGGACTTTACTTTATCAGACCTCTGAAAGCTAAGCAGCAGTTCTTAGTCTACTGTGAAATTGATGGGTCTGGAAATGGATGGACTGTGTTTCAGAAG
Seq C2 exon
AGGCTTGATGGCAGTCTGGATTTCAAGAAAAACTGGATTCAATATAAAGAAGGGTTTGGACATCTGTCTCCTACTGGAAACACAGAATTTTGGCTGGGAAATGAGAAGATTCATTTGATAAGCACACAGTCTACCATCCCTTATGTATTAAGAATACAGTTGGAGGACTGGAATGGCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006745-'4-10,'4-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(26.9=86.7),PF045827=Reo_sigmaC=FE(25.7=100),PF0014713=Fibrinogen_C=PU(1.2=6.7)
A:
PF045827=Reo_sigmaC=PD(18.7=71.1),PF0014713=Fibrinogen_C=FE(18.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACTGTCAAGAGCCTTGT
R:
GGTTCTGCCATTCCAGTCCTC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]