GgaEX0013605 @ galGal4
Exon Skipping
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19807653-19808788:-
Coord C1 exon
chr4:19808658-19808788
Coord A exon
chr4:19808000-19808133
Coord C2 exon
chr4:19807653-19807837
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTGAATATCTTTACTTCAGATT
3' ss Score
6.62
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACAGTTGACAGATATGCATATAATGAACAGCAACAAGATCACACAACTGAAACAGAAGATTGCTCAGCTTGAGTCACACTGCCAGGAACCATGCAAAGATACTGCTGAAATACAGGAGACAACTGGAAGAG
Seq A exon
ATTGTCAAGATATTGCAAATAAAGGTGCCAGAAAAAGTGGTCTTTACTTCATCAAGCCTCAAAAAGCTAAGCAGTCATTCCTAGTCTACTGTGAGATTGACACATATGGCAACGGCTGGACAGTATTACAGAGG
Seq C2 exon
AGATTGGATGGGAGTGAGGACTTCCGGAGAAATTGGGTTCAATACAAGGAAGGATTTGGACATCTGTCACCAGATGACACCACAGAATTTTGGCTGGGCAATGAAAAGATTCATTTAATAACTACACAGTCCACTCTGCCATATGCCTTGCGAATAGAATTGGAGGACTGGTCTGGCAAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268_MULTIEX1-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.289 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(26.9=86.7),PF061607=EzrA=PD(27.0=68.9),PF083176=Spc7=FE(33.8=100),PF123293=TMF_DNA_bd=PD(47.5=64.4),PF0014713=Fibrinogen_C=PU(1.2=6.7)
A:
PF083176=Spc7=PD(12.3=35.6),PF0014713=Fibrinogen_C=FE(18.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCTTGAGTCACACTGCC
R:
GCCAGACCAGTCCTCCAATTC
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]