DreEX0032719 @ danRer10

Exon Skipping

Gene

ENSDARG00000037281 | fgg

Description

fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]

Coordinates

chr1:24983577-24985311:-

Coord C1 exon

chr1:24985181-24985311

Coord A exon

chr1:24983880-24984013

Coord C2 exon

chr1:24983577-24983761

Length

134 bp

Sequences

Splice sites

3' ss Seq

TATGTATGTCATGTGCCCAGATT

3' ss Score

5.86

5' ss Seq

AGGGTATAA

5' ss Score

2.31

Exon sequences

Seq C1 exon

TCAACTGCAGTCAGTCCTTCAAGCTAACGAGAAAAAAATAACGGATTTAAAGCAGATGTCTATGCAGCTGGACCAAATGTGCAAAGAGCCCTGCAAAGACACTGTGGAGATTCAGACAGTCACTGGCAAAG

Seq A exon

ATTGTCAGGACATTGCAAACAAAGGTGGTAAGGTCAGCGGGCTGTATTATGTGAAACCAGCCAGAGCCCCTGAAGCGTTCCTGGTCTACTGTGAAATCGACAGCTTTGGACGTGGATGGACTGTACTTCAGAGG

Seq C2 exon

AGGCGGGATGGCAGCGTTGACTTCAGCAAAAACTGGATCCAGTATAAGGAAGGCTTTGGTTACCTCTCACCCGATGACAGGACTGAGTTCTGGTTGGGAAATGAGAAGATACATCTGCTGTCAGTTCAGTCCAGCGTGCCTTATGTGCTGAGGATAGAGATGGTCGATTGGGAAGGCAACAAAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000037281-'5-8,'5-7,8-8

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF045827=Reo_sigmaC=PD(21.2=73.3),PF087025=Fib_alpha=PD(27.5=86.7),PF083176=Spc7=FE(30.1=100),PF131661=AAA_13=FE(32.1=100),PF0149614=V_ATPase_I=FE(29.7=100),PF0014713=Fibrinogen_C=PU(2.5=6.7)

A:

PF083176=Spc7=PD(10.3=33.3),PF131661=AAA_13=PD(8.8=26.7),PF0149614=V_ATPase_I=PD(16.2=53.3),PF0014713=Fibrinogen_C=FE(36.4=100)

C2:

PF0014713=Fibrinogen_C=FE(25.3=100)

Main Inclusion Isoform:

ENSDARP00000054229