RnoEX6009963 @ rn6
Exon Skipping
Gene
ENSRNOG00000025074 | Fgg
Description
fibrinogen gamma chain [Source:RGD Symbol;Acc:2613]
Coordinates
chr2:181989389-181990854:+
Coord C1 exon
chr2:181989389-181989519
Coord A exon
chr2:181989787-181989920
Coord C2 exon
chr2:181990670-181990854
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTTGCCCTTTCTTCTCCAGATT
3' ss Score
11.98
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTATTTACAGGACATCTATACTTCAAATAAGCAGAAGATCACGAACCTGAAACAGAAGGTGGCCCAGCTTGAAGCTCAGTGCCAGGAGCCTTGCAAGGACTCTGTGCGAATCCATGACACAACCGGAAAAG
Seq A exon
ATTGTCAGGATATCGCCAACAAGGGTGCCAAAGAAAGTGGACTTTACTTCATTCGGCCTTTGAAAGCCACGCAGCAGTTCTTAGTGTACTGTGAAATCGACGGATCTGGAAATGGCTGGACCGTATTGCAGAAG
Seq C2 exon
AGGCTTGATGGCAGTGTGGATTTCAAGAAGAACTGGATTCAGTATAAAGAAGGATTTGGACACCTGTCACCTACTGGCACCACAGAGTTTTGGCTGGGCAATGAGAAGATTCATCTGATAAGCATGCAGTCCACCATCCCATACGCACTGAGAATACAGCTCAAAGACTGGAGTGGCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025074-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(26.9=86.7),PF0014713=Fibrinogen_C=PU(1.2=6.7)
A:
PF0014713=Fibrinogen_C=FE(18.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAAGCTCAGTGCCAGGAG
R:
TCCTGCCACTCCAGTCTTTGA
Band lengths:
245-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]