HsaEX6086593 @ hg19

Exon Skipping

Gene

ENSG00000171557 | FGG

Description

fibrinogen gamma chain [Source:HGNC Symbol;Acc:3694]

Coordinates

chr4:155529618-155531349:-

Coord C1 exon

chr4:155531219-155531349

Coord A exon

chr4:155530782-155530915

Coord C2 exon

chr4:155529618-155529802

Length

134 bp

Sequences

Splice sites

3' ss Seq

AGTCGATTCTCCTTCTCTAGATT

3' ss Score

7.01

5' ss Seq

AAGGTAATT

5' ss Score

8.83

Exon sequences

Seq C1 exon

ATATTTGCAGGAAATATATAATTCAAATAATCAAAAGATTGTTAACCTGAAAGAGAAGGTAGCCCAGCTTGAAGCACAGTGCCAGGAACCTTGCAAAGACACGGTGCAAATCCATGATATCACTGGGAAAG

Seq A exon

ATTGTCAAGACATTGCCAATAAGGGAGCTAAACAGAGCGGGCTTTACTTTATTAAACCTCTGAAAGCTAACCAGCAATTCTTAGTCTACTGTGAAATCGATGGGTCTGGAAATGGATGGACTGTGTTTCAGAAG

Seq C2 exon

AGACTTGATGGCAGTGTAGATTTCAAGAAAAACTGGATTCAATATAAAGAAGGATTTGGACATCTGTCTCCTACTGGCACAACAGAATTTTGGCTGGGAAATGAGAAGATTCATTTGATAAGCACACAGTCTGCCATCCCATATGCATTAAGAGTGGAACTGGAAGACTGGAATGGCAGAACCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000171557-'9-16,'9-15,11-16=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF087025=Fib_alpha=PD(55.7=86.7),PF083176=Spc7=FE(41.5=100),PF123293=TMF_DNA_bd=PD(57.7=66.7),PF032468=Pneumo_ncap=FE(44.0=100),PF125843=TRAPPC10=FE(41.9=100),PF0014713=Fibrinogen_C=PU(5.8=6.7)

A:

PF083176=Spc7=PD(30.2=71.1),PF032468=Pneumo_ncap=PD(25.0=55.6),PF125843=TRAPPC10=FE(41.9=100),PF0014713=Fibrinogen_C=FE(84.6=100)

C2:

PF0014713=Fibrinogen_C=FE(25.3=100)

Main Inclusion Isoform:

ENSP00000336829