GgaEX0013605 @ galGal3

Exon Skipping

Gene

ENSGALG00000009268 | FGG

Description

NA

Coordinates

chr4:21418270-21419405:-

Coord C1 exon

chr4:21419275-21419405

Coord A exon

chr4:21418617-21418750

Coord C2 exon

chr4:21418270-21418454

Length

134 bp

Sequences

Splice sites

3' ss Seq

TTTGAATATCTTTACTTCAGATT

3' ss Score

6.62

5' ss Seq

AGGGTATGT

5' ss Score

8.34

Exon sequences

Seq C1 exon

ACAGTTGACAGATATGCATATAATGAACAGCAACAAGATCACACAACTGAAACAGAAGATTGCTCAGCTTGAGTCACACTGCCAGGAACCATGCAAAGATACTGCTGAAATACAGGAGACAACTGGAAGAG

Seq A exon

ATTGTCAAGATATTGCAAATAAAGGTGCCAGAAAAAGTGGTCTTTACTTCATCAAGCCTCAAAAAGCTAAGCAGTCATTCCTAGTCTACTGTGAGATTGACACATATGGCAACGGCTGGACAGTATTACAGAGG

Seq C2 exon

AGATTGGATGGGAGTGAGGACTTCCGGAGAAATTGGGTTCAATACAAGGAAGGATTTGGACATCTGTCACCAGATGACACCACAGAATTTTGGCTGGGCAATGAAAAGATTCATTTAATAACTACACAGTCCACTCTGCCATATGCCTTGCGAATAGAATTGGAGGACTGGTCTGGCAAAAAAGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000009268-'6-6,'6-5,8-6

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.289 A=0.111 C2=0.000

Domain overlap (PFAM):

C1:

PF087025=Fib_alpha=PD(26.9=86.7),PF061607=EzrA=PD(27.0=68.9),PF0166511=Rota_NSP3=PD(36.4=88.9),PF0060114=Flu_NS2=PD(31.4=60.0),PF086876=ASD2=FE(31.4=100),PF083176=Spc7=FE(33.6=100),PF123293=TMF_DNA_bd=PD(47.5=64.4),PF0014713=Fibrinogen_C=PU(1.2=6.7)

A:

PF086876=ASD2=PD(23.6=73.3),PF083176=Spc7=PD(13.0=37.8),PF0014713=Fibrinogen_C=FE(18.3=100)

C2:

PF0014713=Fibrinogen_C=FE(25.3=100)

Main Inclusion Isoform:

ENSGALP00000031659