HsaEX6086593 @ hg38
Exon Skipping
Gene
ENSG00000171557 | FGG
Description
fibrinogen gamma chain [Source:HGNC Symbol;Acc:HGNC:3694]
Coordinates
chr4:154608466-154610197:-
Coord C1 exon
chr4:154610067-154610197
Coord A exon
chr4:154609630-154609763
Coord C2 exon
chr4:154608466-154608650
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGTCGATTCTCCTTCTCTAGATT
3' ss Score
7.01
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATATTTGCAGGAAATATATAATTCAAATAATCAAAAGATTGTTAACCTGAAAGAGAAGGTAGCCCAGCTTGAAGCACAGTGCCAGGAACCTTGCAAAGACACGGTGCAAATCCATGATATCACTGGGAAAG
Seq A exon
ATTGTCAAGACATTGCCAATAAGGGAGCTAAACAGAGCGGGCTTTACTTTATTAAACCTCTGAAAGCTAACCAGCAATTCTTAGTCTACTGTGAAATCGATGGGTCTGGAAATGGATGGACTGTGTTTCAGAAG
Seq C2 exon
AGACTTGATGGCAGTGTAGATTTCAAGAAAAACTGGATTCAATATAAAGAAGGATTTGGACATCTGTCTCCTACTGGCACAACAGAATTTTGGCTGGGAAATGAGAAGATTCATTTGATAAGCACACAGTCTGCCATCCCATATGCATTAAGAGTGGAACTGGAAGACTGGAATGGCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171557-'8-19,'8-16,11-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=PD(24.5=86.7),PF087025=Fib_alpha=PD(26.9=86.7),PF083176=Spc7=FE(27.7=100),PF0014713=Fibrinogen_C=PU(1.2=6.7)
A:
PF083176=Spc7=PD(18.9=66.7),PF0014713=Fibrinogen_C=FE(18.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAAGCACAGTGCCAGGAA
R:
CTGCCATTCCAGTCTTCCAGT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains