MmuEX6071589 @ mm9
Exon Skipping
Gene
ENSMUSG00000033860 | Fgg
Description
fibrinogen gamma chain [Source:MGI Symbol;Acc:MGI:95526]
Coordinates
chr3:82813986-82815451:+
Coord C1 exon
chr3:82813986-82814116
Coord A exon
chr3:82814378-82814511
Coord C2 exon
chr3:82815267-82815451
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTGCGATTTCTTCATCAGATT
3' ss Score
7.92
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTATTTACAGGAAATCTATAATTCAAATAACCAGAAGATCACAAACCTAAAACAGAAGGTAGCCCAGCTTGAAGCCCAGTGCCAGGAGCCTTGCAAGGACTCTGTGCAAATCCATGACACAACTGGAAAAG
Seq A exon
ATTGTCAGGAAATTGCCAACAAGGGCGCCAAAGAAAGTGGACTTTACTTCATTCGACCTTTGAAAGCTAAGCAGCAGTTCTTAGTGTACTGTGAAATCGACGGATCTGGAAATGGTTGGACCGTATTGCAGAAG
Seq C2 exon
AGGATTGATGGCAGTTTGGATTTCAAGAAGAACTGGATTCAGTATAAAGAAGGATTTGGACACCTGTCGCCTACTGGCACCACAGAGTTTTGGCTGGGAAATGAGAAGATTCATTTGATAAGCATGCAGTCCACAATTCCATATGCACTGAGAATACAGCTCAAAGACTGGAATGGCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033860-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(26.9=86.7),PF083176=Spc7=FE(28.4=100),PF0014713=Fibrinogen_C=PU(1.2=6.7)
A:
PF083176=Spc7=PD(17.4=60.0),PF0014713=Fibrinogen_C=FE(18.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGGTAGCCCAGCTTGA
R:
TGCCATTCCAGTCTTTGAGCT
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: