BtaEX6071133 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006745 | FGG
Description
Bos taurus fibrinogen gamma chain (FGG), mRNA. [Source:RefSeq mRNA;Acc:NM_173911]
Coordinates
chr17:2823463-2825467:+
Coord C1 exon
chr17:2823463-2823646
Coord A exon
chr17:2823758-2823851
Coord C2 exon
chr17:2825337-2825467
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTCTGATCCCATATTACAGATA
3' ss Score
7.83
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GGTAGTTATTGCCCAACTACCTGTGGAATTGCAGATTTCCTGAATAATTACCAAACCAGTGTAGACAAAGATCTACGAACTTTGGAAGGCATCTTATATCAGGTTGAGAACAAAACATCAGAAGCCAGAGAGCTGGTCAAAGCAATCCAAATCAGCTATAACCCTGATCAACCATCAAAGCCAA
Seq A exon
ATAACATAGAGAGTGCTACCAAGAATTCCAAGAGTATGATGGAAGAAATTATGAAATATGAAACACTGATATCAACACATGAATCAACAATTCG
Seq C2 exon
ATTTTTGCAAGAAATATATAACTCAAATAGTCAAAAAATCGTTAACCTAAGAGATAAAGTGGTCCAGCTTGAAGCAAACTGTCAAGAGCCTTGTCAAGATACAGTGAAAATACATGATGTAACTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006745-'2-8,'2-6,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(42.1=100),PF045827=Reo_sigmaC=FE(35.7=100)
A:
PF087025=Fib_alpha=FE(21.4=100),PF045827=Reo_sigmaC=FE(18.1=100)
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF045827=Reo_sigmaC=FE(25.7=100),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGAAGCCAGAGAGCTG
R:
TCTTGACAAGGCTCTTGACAGT
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]