GgaEX1025033 @ galGal4
Exon Skipping
Gene
ENSGALG00000009268 | FGG
Description
fibrinogen, gamma chain precursor [Source:RefSeq peptide;Acc:NP_990320]
Coordinates
chr4:19803833-19810106:-
Coord C1 exon
chr4:19809923-19810106
Coord A exon
chr4:19809728-19809821
Coord C2 exon
chr4:19803833-19805824
Length
94 bp
Sequences
Splice sites
3' ss Seq
TACCTTTGTCTGTTCTACAGAAT
3' ss Score
8.72
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
Exon sequences
Seq C1 exon
GGTAGCTACTGCCCCACAACTTGTGGCATTGCAGATTTCTTTAACAAATACCGTCTCACTACGGATGGTGAACTGTTAGAAATTGAGGGACTTCTGCAGCAAGCTACTAACTCCACAGGATCAATAGAATATTTGATTCAACACATCAAAACCATCTATCCTTCAGAGAAGCAGACACTACCAC
Seq A exon
AATCTATTGAGCAATTGACTCAGAAGTCCAAGAAAATAATTGAAGAAATTATCAGATATGAAAACACTATTTTGGCTCATGAAAATACTATACA
Seq C2 exon
GTTGGAGACTCATAAAGGGGCAATTTAATAAAGACTGATCTGAATGGAGAAAATAAATCTTTTATTTGTACGACACTGAACTTATCTCACCTTCCACAATTTGGACATCAGTGTTGTGAAATGTCATCGACTATAAAATGCACAACAGTTTTCCTTGAGCAGCGCTTACCTCTTTACATGGTTATTTTTTCTGTACACATTCCCAATAAATTTTTGATTATTACAGAAGAGCTGAGTTTGCTATTTGTGTTCTGCTGTTGGCCGAACACAACACAGTAAACACTGTGACTGCTGGAAGGGTACTCTGAACAAATCTGGTTCAGTTTTTCCTTCTCTTTATTTAGAATTATGTGCTGGAGCTATTTCTCCATAAAACATGGCTAGCTTTCAACAGTCTTCACTTTGTTTTCTGATGAAACTGTCAATTTGTGACACAGACCAAAGTACACAGCAACTTGAAAGGACCTAGTTTGCTGCTGGAGCCGCTTAAACAAACATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009268_MULTIEX1-3/8=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=1.000
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(42.1=100),PF061607=EzrA=PU(45.2=83.9),PF083176=Spc7=PU(29.2=61.3),PF123293=TMF_DNA_bd=PU(0.1=0.0)
A:
PF087025=Fib_alpha=FE(21.4=100),PF061607=EzrA=FE(27.0=100),PF083176=Spc7=FE(23.8=100),PF123293=TMF_DNA_bd=PU(50.8=96.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAAGCAGACACTACCAC
R:
GCTCAAGGAAAACTGTTGTGCA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]