GgaEX1025033 @ galGal3

Exon Skipping

Gene

ENSGALG00000009268 | FGG

Description

NA

Coordinates

chr4:21419275-21420723:-

Coord C1 exon

chr4:21420540-21420723

Coord A exon

chr4:21420345-21420438

Coord C2 exon

chr4:21419275-21419405

Length

94 bp

Sequences

Splice sites

3' ss Seq

TACCTTTGTCTGTTCTACAGAAT

3' ss Score

8.72

5' ss Seq

ACAGTAGGT

5' ss Score

5.67

Exon sequences

Seq C1 exon

GGTAGCTACTGCCCCACAACTTGTGGCATTGCAGATTTCTTTAACAAATACCGTCTCACTACGGATGGTGAACTGTTAGAAATTGAGGGACTTCTGCAGCAAGCTACTAACTCCACAGGATCAATAGAATATTTGATTCAACACATCAAAACCATCTATCCTTCAGAGAAGCAGACACTACCAC

Seq A exon

AATCTATTGAGCAATTGACTCAGAAGTCCAAGAAAATAATTGAAGAAATTATCAGATATGAAAACACTATTTTGGCTCATGAAAATACTATACA

Seq C2 exon

ACAGTTGACAGATATGCATATAATGAACAGCAACAAGATCACACAACTGAAACAGAAGATTGCTCAGCTTGAGTCACACTGCCAGGAACCATGCAAAGATACTGCTGAAATACAGGAGACAACTGGAAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000009268-'3-4,'3-3,4-4=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.062 C2=0.289

Domain overlap (PFAM):

C1:

PF087025=Fib_alpha=FE(42.1=100),PF061607=EzrA=PU(45.2=83.9),PF0166511=Rota_NSP3=PU(34.5=61.3),PF0060114=Flu_NS2=PU(31.4=43.5),PF086876=ASD2=PU(22.1=50.0),PF083176=Spc7=PU(29.0=61.3),PF123293=TMF_DNA_bd=PU(0.1=0.0)

A:

PF087025=Fib_alpha=FE(21.4=100),PF061607=EzrA=FE(27.0=100),PF0166511=Rota_NSP3=FE(28.2=100),PF0060114=Flu_NS2=FE(36.0=100),PF086876=ASD2=FE(22.1=100),PF083176=Spc7=FE(23.7=100),PF123293=TMF_DNA_bd=PU(50.8=96.9)

C2:

PF087025=Fib_alpha=PD(26.9=86.7),PF061607=EzrA=PD(27.0=68.9),PF0166511=Rota_NSP3=PD(36.4=88.9),PF0060114=Flu_NS2=PD(31.4=60.0),PF086876=ASD2=FE(31.4=100),PF083176=Spc7=FE(33.6=100),PF123293=TMF_DNA_bd=PD(47.5=64.4),PF0014713=Fibrinogen_C=PU(1.2=6.7)

Main Inclusion Isoform:

ENSGALP00000031659