RnoEX6009965 @ rn6
Exon Skipping
Gene
ENSRNOG00000025074 | Fgg
Description
fibrinogen gamma chain [Source:RGD Symbol;Acc:2613]
Coordinates
chr2:181987682-181989519:+
Coord C1 exon
chr2:181987682-181987865
Coord A exon
chr2:181987957-181988050
Coord C2 exon
chr2:181989389-181989519
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGGCCCTGTGACAGGTA
3' ss Score
7.56
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GGTAGTTACTGCCCAACCACTTGTGGCATCTCAGACTTCCTGAATTCTTACCAAACCGACGTGGACACTGACCTCCAGACTCTGGAAAACATCTTACAACGAGCTGAAAACAGAACCACAGAAGCCAAGGAACTGATTAAAGCCATCCAGGTTTACTACAACCCAGACCAACCCCCAAAGCCGG
Seq A exon
GTATGATAGAGGGTGCCACTCAGAAGTCTAAGAAGATGGTAGAAGAAATCTTGAAGTACGAAGCACTGTTACTAACCCATGAGTCGAGTATCCG
Seq C2 exon
GTATTTACAGGACATCTATACTTCAAATAAGCAGAAGATCACGAACCTGAAACAGAAGGTGGCCCAGCTTGAAGCTCAGTGCCAGGAGCCTTGCAAGGACTCTGTGCGAATCCATGACACAACCGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025074-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.219 C2=0.022
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(42.1=100)
A:
PF087025=Fib_alpha=FE(21.4=100)
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGAAGCCAAGGAACTG
R:
GATTCGCACAGAGTCCTTGCA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]