MmuEX6071591 @ mm10
Exon Skipping
Gene
ENSMUSG00000033860 | Fgg
Description
fibrinogen gamma chain [Source:MGI Symbol;Acc:MGI:95526]
Coordinates
chr3:83008374-83010194:+
Coord C1 exon
chr3:83008374-83008557
Coord A exon
chr3:83008648-83008741
Coord C2 exon
chr3:83010064-83010194
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGACCCTGTTACAGGTA
3' ss Score
9.61
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTAGTTTCTGCCCAACCACCTGTGGTATCGCAGATTTCCTGTCTTCTTACCAAACCGACGTGGACAATGATCTCCGAACGCTGGAAGACATCTTATTCCGGGCTGAAAACAGAACCACAGAAGCCAAAGAACTGATCAAAGCAATTCAGGTTTACTACAACCCAGACCAACCCCCAAAGCCAG
Seq A exon
GTATGATAGACAGTGCCACTCAGAAGTCTAAGAAGATGGTAGAAGAAATTGTGAAATACGAAGCGCTGCTGTTAACCCACGAGACAAGCATTCG
Seq C2 exon
GTATTTACAGGAAATCTATAATTCAAATAACCAGAAGATCACAAACCTAAAACAGAAGGTAGCCCAGCTTGAAGCCCAGTGCCAGGAGCCTTGCAAGGACTCTGTGCAAATCCATGACACAACTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033860_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.219 C2=0.022
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(42.1=100)
A:
PF087025=Fib_alpha=FE(21.4=100)
C2:
PF087025=Fib_alpha=PD(26.9=86.7),PF0014713=Fibrinogen_C=PU(1.2=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACGCTGGAAGACATCTT
R:
TCAAGCTGGGCTACCTTCTGT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types