DreEX6031716 @ danRer10

Exon Skipping

Gene

ENSDARG00000037281 | fgg

Description

fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]

Coordinates

chr1:24985181-24987558:-

Coord C1 exon

chr1:24987375-24987558

Coord A exon

chr1:24985424-24985508

Coord C2 exon

chr1:24985181-24985311

Length

85 bp

Sequences

Splice sites

3' ss Seq

CTTTACCATCTTTTTGTCAGATA

3' ss Score

7.01

5' ss Seq

ATAGTAAGC

5' ss Score

5.26

Exon sequences

Seq C1 exon

GGAACATACTGTCCAACAACATGTGGAGTCGCTGATTACTTGCAGAGGTACAAGCCTGATATGGACAAAAAGCTGGATGATATGGAACAGGATTTGGAAGAGATCGCCAACCTCACCAGAGGAGCTCAAGACAAAGTGGTCTACCTGAAAGATTCAGAAGCACAAGCACAAAAACAATCACCAG

Seq A exon

ATACTTACATAAAAAAGTCTTCAAATATGCTGGATGATATACTACGATTTGAGAAGAGCATTCTCGCTCAGGAAGAACAAATATA

Seq C2 exon

TCAACTGCAGTCAGTCCTTCAAGCTAACGAGAAAAAAATAACGGATTTAAAGCAGATGTCTATGCAGCTGGACCAAATGTGCAAAGAGCCCTGCAAAGACACTGTGGAGATTCAGACAGTCACTGGCAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000037281-'2-5,'2-4,4-5=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.290 A=0.103 C2=0.000

Domain overlap (PFAM):

C1:

PF045827=Reo_sigmaC=FE(39.1=100),PF087025=Fib_alpha=FE(43.0=100),PF083176=Spc7=PU(39.7=93.5),PF131661=AAA_13=PU(38.0=83.9),PF0149614=V_ATPase_I=PU(34.5=82.3)

A:

PF045827=Reo_sigmaC=FE(17.9=100),PF087025=Fib_alpha=FE(19.7=100),PF083176=Spc7=FE(19.2=100),PF131661=AAA_13=FE(20.4=100),PF0149614=V_ATPase_I=FE(18.9=100)

C2:

PF045827=Reo_sigmaC=PD(21.2=73.3),PF087025=Fib_alpha=PD(27.5=86.7),PF083176=Spc7=FE(30.1=100),PF131661=AAA_13=FE(32.1=100),PF0149614=V_ATPase_I=FE(29.7=100),PF0014713=Fibrinogen_C=PU(2.5=6.7)

Main Inclusion Isoform:

ENSDARP00000054229