BtaEX6074407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74934504-74935530:-
Coord C1 exon
chr17:74935413-74935530
Coord A exon
chr17:74935000-74935171
Coord C2 exon
chr17:74934504-74934521
Length
172 bp
Sequences
Splice sites
3' ss Seq
CATGCCCCCTCTCCCCACAGTCG
3' ss Score
12.71
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAATGTGAGCTCAGACGGCGCAGAGGCCCGGCGGCGGCTCCGCGAGTGTGAGGGGCTGGTGGACGCCCTGCTGCACGCTCTGCAGTCGGCCGTGGGCAGGAAGGACACTGACAACAAG
Seq A exon
TCGGTGGAGAACTGTGTGTGCATTGTCCGGAACCTCTCCTACCACGTGCATAAGGAGGTGCCGGGGGCCGAAAGGTACCAGGAGGCCGAGCCTGGGCCCCCGGGTGGTTCCGGGAGCGCCCAGCGCCGGAGCAGGGAGGACGCCGGCTGCTTCGGTGGCAAGAAGGCCAAAG
Seq C2 exon
AAGAGTGGTTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473-'7-12,'7-10,8-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.517 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]