GgaEX1009276 @ galGal3
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1099327-1106628:-
Coord C1 exon
chr15:1106511-1106628
Coord A exon
chr15:1105209-1105380
Coord C2 exon
chr15:1099327-1099398
Length
172 bp
Sequences
Splice sites
3' ss Seq
CACCAAGTTTTTTGTCGCAGTCC
3' ss Score
4.72
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GAATGTAAGTTCAGATGGAGCAGAAGCACGCAGAAGGCTAAGAGAGTGTGATGGCTTGGTGGATGCCCTACTTCACGCCCTACAGTCTGCAGTTGGCAAGAAAGATACGGACAATAAG
Seq A exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
Seq C2 exon
GAAAGAAGAATGGAGATTTGGACAGGAGTTTTGATACACTTGATTTGCCGAAGCGGTCTGAGACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040-'11-13,'11-11,12-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.448 C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051418=Arm=PU(4.9=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGTTCAGATGGAGCAGAAGCA
R:
CTTTTGCTGTCTCAGACCGCT
Band lengths:
186-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]