RnoEX0011987 @ rn6
Exon Skipping
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86740715-86742737:-
Coord C1 exon
chr11:86742620-86742737
Coord A exon
chr11:86742181-86742352
Coord C2 exon
chr11:86740715-86740786
Length
172 bp
Sequences
Splice sites
3' ss Seq
CAGGCCACCTCTTCCCACAGTCA
3' ss Score
6.39
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAACGTGAGCTCAGATGGTGCAGAGGCCCGGCGGCGACTTCGTGAGTGCGAAGGGCTGGTGGACGCTCTCTTACATGCCCTGCAGTCAGCTGTGGGCAGGAAAGACACAGATAATAAG
Seq A exon
TCAGTAGAGAACTGTGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAGGAAGTTCCAGGGGCTGACAGGTACCAGGAGGTGGAGCCTGGGATCCCGGGCAGTGCTGCAACCTCCCAGCGTCGGAGGAAGGATGACGCCAGCTGCTTTGGTGGCAAGAAAGCGAAAG
Seq C2 exon
GGAAGAAGGATGCAGAGGCCGACCGGAACTTTGACACATTGGACCTGCCCAAACGTACTGAAGCTGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888-'20-18,'20-15,21-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.445 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(13.8=52.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGAGCTCAGATGGTGC
R:
TCGCAGCTTCAGTACGTTTGG
Band lengths:
187-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]