GgaEX1009276 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1082785-1097900:-
Coord C1 exon
chr15:1097717-1097900
Coord A exon
chr15:1088667-1088838
Coord C2 exon
chr15:1082785-1082856
Length
172 bp
Sequences
Splice sites
3' ss Seq
CACCAAGTTTTTTGTCGCAGTCC
3' ss Score
4.72
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GCACTCTGTGGAATTTGTCTTCCTACGAGCCCCTGAAGATGGTCATCATCAACCACGGCCTGCAGACGCTCACCAACGAGGTGATTATACCCCATTCTGGCTGGGAGAGTGAGCCCAACGAGGACTCCAAGCCTCGCGATGCTGAGTGGACAACTGTCTTCAAGAACACTTCTGGCTGCTTACG
Seq A exon
TCCGTGGAGAATTGTGTGTGCATCATGAGGAACCTTTCCTATCATGTCCACAAAGAGGTCCCCGGAGCTGATAAGTACCAAGAACTTGATGCTGGTCAGACTGCGGGCACGGGAGGCTCTCAGAAAAAGAAGAAAGATGATGCTGGTTGTTTCGGTGGAAAGAAAGCTAAAG
Seq C2 exon
GAAAGAAGAATGGAGATTTGGACAGGAGTTTTGATACACTTGATTTGCCGAAGCGGTCTGAGACAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX4-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.445 C2=0.105
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(1.8=3.2)
A:
NO
C2:
PF0051418=Arm=PU(4.9=8.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTTCCTACGAGCCCCT
R:
CTTTTGCTGTCTCAGACCGCT
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]