DreEX0015017 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25722522-25734433:-
Coord C1 exon
chr5:25734316-25734433
Coord A exon
chr5:25730001-25730172
Coord C2 exon
chr5:25722522-25722593
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTGCTGTCTGTCAGTCT
3' ss Score
7.57
5' ss Seq
AAGGTCATT
5' ss Score
4.32
Exon sequences
Seq C1 exon
GAATGTGAGTTCAGACGGCGCAGAGGCGCGCAGACGCTTGAGGGAGTGTGAGGGACTGGTGGATGCTTTGCTGCATGCACTTCAGTCTGCTGTGGGCAAGAAGGACATGGATAACAAG
Seq A exon
TCTGTGGAAAACTGTGTTTGCATCATGAGGAACCTGTCGTACCATGTACACAAGGAGGTTCCAGGAGCTGAGAAGTTTCAGGACCCGTCGGCTCTACAGGCCCCCGGCTCTGCTGGCACTCAGAGGAAGAAGAAAGATGATGCAGGCTGTTTCGGCGGAAAGAAAGCCAAAG
Seq C2 exon
GGAGGAAAAACGGAGAGCATGACAAAAACTATGACACGTTGGACCTCCCCAAGCGCACAGAGCCCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688-'22-28,'22-21,23-28
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.578 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0051418=Arm=PU(2.5=4.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGAGTTCAGACGGCGC
R:
CTTTAGTGGGCTCTGTGCG
Band lengths:
190-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]