BtaEX6074457 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017746 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001178379]
Coordinates
chr20:437286-450247:-
Coord C1 exon
chr20:450084-450247
Coord A exon
chr20:438554-438704
Coord C2 exon
chr20:437286-437360
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCTTTGGCCCCCCAGGCT
3' ss Score
9.19
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CCACTTGGCCCAAAACCCGTTCGTGTGCGACTGCCACTTGAGGTGGCTGGCTGACTACCTGCAGGACAACCCCATTGAGACCAGCGGGGCCCGCTGCAGCAGCCCACGCCGGCTGGCCAACAAGCGCATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAG
Seq A exon
GCTCGGAGGATTACCGCAGCAGGTTCAGCAGCGAGTGCTTCATGGACCTCGTGTGCCCAGACAGGTGCCGCTGTGAGGGCACCATCGTGGACTGCTCCAACCAGAAGCTGGCCCGCATCCCCAGCCACCTCCCCGAATACGTCACCGACCT
Seq C2 exon
GCGACTAAACGACAATGAGATATCTGTTCTTGAGGCCACTGGCATCTTCAAGAAGTTGCCCAACCTGCGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017746-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(36.7=32.1)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
C2:
PF138551=LRR_8=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGCCCAAAACCCGTTC
R:
GCAGGTTGGGCAACTTCTTGA
Band lengths:
230-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]