GgaEX6011075 @ galGal4
Exon Skipping
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3926267-3940328:+
Coord C1 exon
chr13:3926267-3926430
Coord A exon
chr13:3938990-3939140
Coord C2 exon
chr13:3940254-3940328
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCCCTTTATTGCAGGGT
3' ss Score
9.75
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACATTTAGCTCAGAATCCATTTGTGTGCGACTGCCATTTGAAGTGGCTGGCTGATTACCTGCAGGATAATCCGATAGAAACCAGCGGCGCTCGATGCAGCAATCCGCGTCGCCTTGCCAACAAACGAATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAG
Seq A exon
GGTCAGAGGATTACAGAAGTAAATTCACTGGGAAGTGTTTCATGGATCTTGTCTGTCCTGAGAAGTGTCGCTGTGAGGGAACAGTTGTGGACTGCTCCAACCAAAAGCTAACCCGATTACCCAGCCACCTTCCTGAATATACCACTGATCT
Seq C2 exon
GCGTTTGAATGACAATGACATTTCTGTTTTGGAAGCTATTGGACTCTTCAAGAAATTGCCCAACCTCAGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'21-43,'21-42,23-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(37.5=32.1)
A:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(4.8=3.9)
C2:
PF127992=LRR_4=FE(59.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCTCAGAATCCATTTGTGTGC
R:
TTTTTCTGAGGTTGGGCAATTTCT
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]