GgaEX6011075 @ galGal3
Exon Skipping
Gene
ENSGALG00000001916 | Q90Z43_CHICK
Description
NA
Coordinates
chr13:4314605-4328668:+
Coord C1 exon
chr13:4314605-4314768
Coord A exon
chr13:4327328-4327478
Coord C2 exon
chr13:4328594-4328668
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTATTTTCCCTTTATTGCAGGGT
3' ss Score
9.75
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACATTTAGCTCAGAATCCATTTGTGTGCGACTGCCATTTGAAGTGGCTGGCTGATTACCTGCAGGATAATCCGATAGAAACCAGCGGCGCTCGATGCAGCAATCCGCGTCGCCTTGCCAACAAACGAATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAG
Seq A exon
GGTCAGAGGATTACAGAAGTAAATTCACTGGGAAGTGTTTCATGGATCTTGTCTGTCCTGAGAAGTGTCGCTGTGAGGGAACAGTTGTGGACTGCTCCAACCAAAAGCTAACCCGATTACCCAGCCACCTTCCTGAATATACCACTGATCT
Seq C2 exon
GCGTTTGAATGACAATGACATTTCTGTTTTGGAAGCTATTGGACTCTTCAAGAAATTGCCCAACCTCAGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(37.5=32.1)
A:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(4.8=3.9)
C2:
PF127992=LRR_4=FE(59.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCTCAGAATCCATTTGTGTGC
R:
TTTTTCTGAGGTTGGGCAATTTCT
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]