RnoEX0083470 @ rn6
Exon Skipping
Gene
ENSRNOG00000007377 | Slit3
Description
slit guidance ligand 3 [Source:RGD Symbol;Acc:69311]
Coordinates
chr10:20423971-20435364:+
Coord C1 exon
chr10:20423971-20424134
Coord A exon
chr10:20433856-20434006
Coord C2 exon
chr10:20435290-20435364
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTGGCCCCATATAGGCT
3' ss Score
7.7
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CCACTTAGCTCAAAACCCGTTTGTTTGCGACTGCCACTTGAAGTGGTTGGCCGACTACCTCCAGGACAACCCCATTGAGACGAGCGGGGCCCGCTGCAGCAGCCCACGCCGGCTGGCCAACAAGCGCATCAGCCAGATCAAAAGCAAGAAGTTCCGCTGCTCAG
Seq A exon
GCTCGGAGGATTATCGCAACAGATTCAGCAGCGAGTGCTTCATGGACCTAGTGTGCCCCGAGAAGTGCCGTTGTGAGGGCACCATTGTGGACTGCTCCAACCAGAAGCTCTCCCGCATCCCGAGCCACCTCCCTGAATATACCACTGACCT
Seq C2 exon
GCGACTGAACGACAATGACATCTCTGTGCTGGAGGCCACTGGGATCTTCAAGAAGTTGCCCAACCTGAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007377-'14-18,'14-16,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(37.5=32.1)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
C2:
PF138551=LRR_8=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTAGCTCAAAACCCGTT
R:
TCCTCAGGTTGGGCAACTTCT
Band lengths:
235-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]