DreEX6057913 @ danRer10
Exon Skipping
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24260169-24270057:-
Coord C1 exon
chr14:24269894-24270057
Coord A exon
chr14:24263343-24263493
Coord C2 exon
chr14:24260169-24260243
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCCTGTGTTTGTCAGGTG
3' ss Score
9.72
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
Exon sequences
Seq C1 exon
ACACCTCGCTCAGAATCCGTTCATGTGTGACTGTCATCTGAAGTGGCTGGCCGACTACCTGTTTGACAATCCAATTGAGACCAGCGGGGCTCGATGCAGCCACCCGCGCCGCCTCGCCAACAAGCGCATCAGCCAGGTCAAGGGCAAGAAGTTTCGCTGCACAG
Seq A exon
GTGCGGAGGACTACCGCAGTCGTCTCAGCGGCGAGTGTTTCCAAGACCTGGTTTGTCCCGAACGCTGCCGATGTGAAGGAACAGTAGTGGACTGCTCCAACCTCAAACTCACCAAAATCCCCCCTCACCTTCCTGAGCACACCACTGACCT
Seq C2 exon
ACGGCTGAACGACAATGAAATCTCCATCTTAGAGGCTACAGGAGCATTCAAGAAGCTTCCAAATCTGCGCAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(36.2=30.4)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
C2:
PF138551=LRR_8=PU(8.2=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCGCTCAGAATCCGTTC
R:
TGCGCAGATTTGGAAGCTTCT
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]