MmuEX6084750 @ mm9
Exon Skipping
Gene
ENSMUSG00000056427 | Slit3
Description
slit homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315202]
Coordinates
chr11:35425775-35437017:+
Coord C1 exon
chr11:35425775-35425938
Coord A exon
chr11:35435510-35435660
Coord C2 exon
chr11:35436943-35437017
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTGGCCCCCATATAGGCT
3' ss Score
6.85
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CCACTTAGCTCAAAACCCATTTGTTTGCGACTGCCACTTGAAGTGGTTGGCTGACTACCTCCAGGACAACCCTATTGAGACAAGCGGGGCCCGCTGCAGCAGCCCACGCCGGCTGGCCAACAAGCGTATCAGCCAGATCAAAAGCAAGAAGTTCCGCTGCTCAG
Seq A exon
GCTCTGAGGATTATCGCAACAGATTCAGCAGTGAGTGCTTCATGGACCTAGTGTGCCCTGAAAAGTGCCGCTGTGAGGGCACCATTGTGGACTGCTCCAACCAGAAGCTAGCCCGCATCCCAAGCCACCTCCCTGAATATACCACTGACTT
Seq C2 exon
GCGACTGAACGACAATGACATCTCTGTGCTGGAGGCCACTGGGATCTTCAAGAAGCTGCCCAACCTGCGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056427-'18-20,'18-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(37.5=32.1)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(8.1=9.8)
C2:
PF138551=LRR_8=FE(40.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTCAAAACCCATTTGTTTGCG
R:
CAGGTTGGGCAGCTTCTTGAA
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: