BtaEX6075908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56556569-56558295:+
Coord C1 exon
chr20:56556569-56556711
Coord A exon
chr20:56557241-56557435
Coord C2 exon
chr20:56558138-56558295
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACTTCAGTCTGTCTTTCCAGGGT
3' ss Score
8.3
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACCTAACTCATTCGTGATCATCACGGCCAACCGGGTGCTTCACTGCAACGCCGACACGCCGGAGGAAATGCACCACTGGATAACGCTGCTGCAGAGATCCAAGGGCGATACCAGAGTGGAGGGCCAGGAGTTCATAGTGAGAG
Seq A exon
GGTGGTTGCACAAAGAAGTGAAAAACAGTCCGAAGATGTCGTCCCTGAAACTGAAGAAACGGTGGTTTGTGCTCACGCACAATTCCTTGGATTACTACAAGAGCTCGGAGAAGAACGCTCTGAAGTTGGGCACCCTGGTTCTCAATAGTCTTTGTTCGGTCGTCCCACCTGATGAGAAGATCTTTAAAGAGACAG
Seq C2 exon
GCTACTGGAACGTCACCGTGTACGGACGCAAGCACTGCTACCGGCTCTACACCAAGCTGCTCAACGAGGCCACCAGGTGGTCCAGCGCCATTCAAAACGTGACGGACACCAAGGCCCCAATTGACACGCCCACGCAGCAGCTGATTCAAGATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'52-49,'52-48,53-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACTGCAACGCCGACA
R:
ATCTTGAATCAGCTGCTGCGT
Band lengths:
258-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]