GgaEX1037957 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75622224-75624266:+
Coord C1 exon
chr2:75622224-75622366
Coord A exon
chr2:75622805-75622999
Coord C2 exon
chr2:75624109-75624266
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTAATTGTGTTGTTCACAGGAT
3' ss Score
9.68
5' ss Seq
CGGGTAATT
5' ss Score
6.79
Exon sequences
Seq C1 exon
ACCCAACTCCTTTGTGATTATTACTGCTAATCGTGTTCTGCACTGTAATGCTGACACACCTGAAGAGATGCATCACTGGATAACTCTGCTGCAGAGGTCAAAGGGGGACACAAGAGTGGAAGGACAAGAATTCATTGTGAGGG
Seq A exon
GATGGCTGCACAAGGAAGTAAAGAACAACCCAAAGATGTCTTCATTAAAACTAAAGAAGCGTTGGTTTGTTTTGACACACAATTCTTTGGACTACTACAAGAGTTCTGAAAAAAATGCTTTGAAATTGGGTACGCTGGTCCTAAACAGCCTCTGTTCAGTGGTCCCACCTGATGAAAAAATCTTCAAAGAGACGG
Seq C2 exon
GCTACTGGAATGTAACTGTATATGGACGCAAACATTGCTACCGCCTCTATACCAAATTACTTAATGAAGCGACCCGCTGGTCGAGTGCCATCCAGAATGTGATTGACACAAAAGCGCCGATTGATACCCCGACTCAGCAACTAATCCAGGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'50-47,'50-46,51-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGTAATGCTGACACACCT
R:
AGTTGCTGAGTCGGGGTATCA
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]