HsaEX6097497 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16679947-16682013:-
Coord C1 exon
chr5:16681871-16682013
Coord A exon
chr5:16681309-16681503
Coord C2 exon
chr5:16679947-16680104
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACTTTAATCTTTTTTTCCAGGAT
3' ss Score
10.84
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACCCAACTCGTTTGTGATCATCACGGCCAACCGGGTGCTGCACTGCAACGCCGACACGCCGGAGGAGATGCACCACTGGATAACCCTGCTGCAGAGGTCCAAAGGGGACACCAGAGTGGAGGGCCAGGAATTCATCGTGAGAG
Seq A exon
GATGGTTGCACAAAGAGGTGAAGAACAGTCCAAAGATGTCTTCACTGAAACTGAAGAAACGGTGGTTTGTACTCACCCACAATTCCCTGGATTACTACAAGAGTTCAGAGAAGAACGCGCTCAAACTGGGGACCCTGGTCCTCAACAGCCTCTGCTCTGTCGTCCCCCCAGATGAGAAGATATTCAAAGAGACAG
Seq C2 exon
GCTACTGGAACGTCACCGTGTACGGGCGCAAGCACTGTTACCGGCTCTACACCAAGCTGCTCAACGAGGCCACCCGGTGGTCCAGTGCCATTCAAAACGTGACTGACACCAAGGCCCCGATCGACACCCCCACCCAGCAGCTGATTCAAGATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'117-105,'117-102,119-105=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAACTCGTTTGTGATCATCA
R:
CGTTTTGAATGGCACTGGACC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains