DreEX6028693 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42770274-42772055:-
Coord C1 exon
chr2:42771913-42772055
Coord A exon
chr2:42770515-42770706
Coord C2 exon
chr2:42770274-42770431
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTTTTGTTTTGCAGGAT
3' ss Score
12.97
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCCGAATGCCTTTGTTATAATCACAGCCCATCGTGTGCTGCATTGCATGGCTGAATCAGCTGAAGAAATGCATCACTGGATCACGCTGCTCCAGCGAACGAAAGGAGACACGCGTGTGCAGGGACAAGAGTTCATCATCAGGG
Seq A exon
GATGGCTATATAAAGAGATCCGAGGCAGCAGTCAAGCGAATCTGAAGCTGAAGAAGCGCTGGTTTGTGCTGACTCACAATTCTGTGGACTATTATAAAAGCTCGGAGAGAAACGCTCTGAAACTGGGCTCTTTAGTGCTGAACAGCCTTTGCTCTGTGCTCGTTCCTGATGAGAGAGTCTTCAGAGAGACCG
Seq C2 exon
GGTACTGGAACGTGAGTGTGTTTGGCCATAAGCATTCATACAGGCTGTACTCCAAGCTGCAGACGGAGGCTAGTCGATGGGCCAACGCTGTGCAGACCGTCATCGACAGCAAACCGCTCATCGACACAAACACGCAGCGGCTTATACTGGACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(47.9=69.4),PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.5=100)
C2:
PF0016924=PH=PD(33.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCATTGCATGGCTGAATC
R:
TATAAGCCGCTGCGTGTTTGT
Band lengths:
253-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]