MmuEX6052927 @ mm9
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25729166-25731035:+
Coord C1 exon
chr15:25729166-25729308
Coord A exon
chr15:25729796-25729990
Coord C2 exon
chr15:25730878-25731035
Length
195 bp
Sequences
Splice sites
3' ss Seq
GCTTGGCCCTTCCTTTCCAGGGT
3' ss Score
9.63
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACCCAACTCATTTGTGATCATCACAGCCAACCGGGTGCTGCACTGTAACGCGGACACCCCAGAGGAGATGCACCACTGGATAACCCTGCTGCAGAGATCCAAGGGGGACACCAGGGTGGAGGGCCAGGAGTTCATCGTCAGAG
Seq A exon
GGTGGCTGCATAAGGAAGTGAAGAACAGTCCGAAGATGTCCTCCCTGAAACTGAAGAAACGGTGGTTCGTGCTGACGCACAATTCCCTGGACTACTACAAGAGCTCAGAGAAGAACGCTCTGAAACTGGGCACTCTGGTCCTCAACAGCCTGTGCTCCGTTGTGCCCCCAGACGAGAAGATATTCAAAGAGACAG
Seq C2 exon
GCTACTGGAATGTCACCGTGTATGGGCGCAAACACTGTTACCGACTCTACACGAAACTACTGAACGAGGCGACTAGGTGGTCCAGCGCCATCCAGAATGTGACTGACACCAAGGCTCCAATCGACACGCCCACCCAGCAGCTGATCCAAGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'51-48,'51-47,52-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(47.2=69.4),PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCACAGCCAACCGGG
R:
GTCGATTGGAGCCTTGGTGTC
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: