MmuEX6052927 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25799411-25801280:+
Coord C1 exon
chr15:25799411-25799553
Coord A exon
chr15:25800041-25800235
Coord C2 exon
chr15:25801123-25801280
Length
195 bp
Sequences
Splice sites
3' ss Seq
GCTTGGCCCTTCCTTTCCAGGGT
3' ss Score
9.63
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACCCAACTCATTTGTGATCATCACAGCCAACCGGGTGCTGCACTGTAACGCGGACACCCCAGAGGAGATGCACCACTGGATAACCCTGCTGCAGAGATCCAAGGGGGACACCAGGGTGGAGGGCCAGGAGTTCATCGTCAGAG
Seq A exon
GGTGGCTGCATAAGGAAGTGAAGAACAGTCCGAAGATGTCCTCCCTGAAACTGAAGAAACGGTGGTTCGTGCTGACGCACAATTCCCTGGACTACTACAAGAGCTCAGAGAAGAACGCTCTGAAACTGGGCACTCTGGTCCTCAACAGCCTGTGCTCCGTTGTGCCCCCAGACGAGAAGATATTCAAAGAGACAG
Seq C2 exon
GCTACTGGAATGTCACCGTGTATGGGCGCAAACACTGTTACCGACTCTACACGAAACTACTGAACGAGGCGACTAGGTGGTCCAGCGCCATCCAGAATGTGACTGACACCAAGGCTCCAATCGACACGCCCACCCAGCAGCTGATCCAAGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'66-66,'66-64,71-66=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(3.8=8.2)
A:
PF0016924=PH=FE(61.9=100)
C2:
PF0016924=PH=PD(33.3=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCACAGCCAACCGGG
R:
GTCGATTGGAGCCTTGGTGTC
Band lengths:
253-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types